Installation
=================

Release
#######

Download MouseFlow pipeline:

::

    $> nextflow pull scilus/nf-mouse_flow
    $> nextflow run scilus/nf-mouse_flow -r 0.1.0dev --help

For developers
##############

Clone MouseFlow pipeline repository:

::

    # Clone with HTTPS
    $> git clone https://github.com/scilus/nf-mouse_flow.git

    # Clone with SSH
    $> git clone git@github.com:scilus/nf-mouse_flow.git

As a developer you will have to run mouseflow using this command:

::

  nextflow run nf-mouse_flow/main.nf --help

Please see :ref:`profiles` section.