Installation

Release

Download MouseFlow pipeline:

$> nextflow pull scilus/nf-mouse_flow
$> nextflow run scilus/nf-mouse_flow -r 0.1.0dev --help

For developers

Clone MouseFlow pipeline repository:

# Clone with HTTPS
$> git clone https://github.com/scilus/nf-mouse_flow.git

# Clone with SSH
$> git clone git@github.com:scilus/nf-mouse_flow.git

As a developer you will have to run mouseflow using this command:

nextflow run nf-mouse_flow/main.nf --help

Please see Profiles section.